# EXCLUDED_RESIDUES HETATM # PDBID_LIST 2ydf # POINT_FILE 2ydf_IO3.ptf # PROPERTIES ATOM_TYPE_IS_C, ATOM_TYPE_IS_CT, ATOM_TYPE_IS_CA, # PROPERTIES ATOM_TYPE_IS_N, ATOM_TYPE_IS_N2, ATOM_TYPE_IS_N3, # PROPERTIES ATOM_TYPE_IS_NA, ATOM_TYPE_IS_O, ATOM_TYPE_IS_O2, # PROPERTIES ATOM_TYPE_IS_OH, ATOM_TYPE_IS_S, ATOM_TYPE_IS_SH, # PROPERTIES ATOM_TYPE_IS_OTHER, PARTIAL_CHARGE, ELEMENT_IS_ANY, # PROPERTIES ELEMENT_IS_C, ELEMENT_IS_N, ELEMENT_IS_O, ELEMENT_IS_S, # PROPERTIES ELEMENT_IS_OTHER, HYDROXYL, AMIDE, AMINE, CARBONYL, # PROPERTIES RING_SYSTEM, PEPTIDE, VDW_VOLUME, CHARGE, NEG_CHARGE, # PROPERTIES POS_CHARGE, CHARGE_WITH_HIS, HYDROPHOBICITY, MOBILITY, # PROPERTIES SOLVENT_ACCESSIBILITY, RESIDUE_NAME_IS_ALA, # PROPERTIES RESIDUE_NAME_IS_ARG, RESIDUE_NAME_IS_ASN, RESIDUE_NAME_IS_ASP, # PROPERTIES RESIDUE_NAME_IS_CYS, RESIDUE_NAME_IS_GLN, RESIDUE_NAME_IS_GLU, # PROPERTIES RESIDUE_NAME_IS_GLY, RESIDUE_NAME_IS_HIS, RESIDUE_NAME_IS_ILE, # PROPERTIES RESIDUE_NAME_IS_LEU, RESIDUE_NAME_IS_LYS, RESIDUE_NAME_IS_MET, # PROPERTIES RESIDUE_NAME_IS_PHE, RESIDUE_NAME_IS_PRO, RESIDUE_NAME_IS_SER, # PROPERTIES RESIDUE_NAME_IS_THR, RESIDUE_NAME_IS_TRP, RESIDUE_NAME_IS_TYR, # PROPERTIES RESIDUE_NAME_IS_VAL, RESIDUE_NAME_IS_HOH, # PROPERTIES RESIDUE_NAME_IS_OTHER, RESIDUE_CLASS1_IS_HYDROPHOBIC, # PROPERTIES RESIDUE_CLASS1_IS_CHARGED, RESIDUE_CLASS1_IS_POLAR, # PROPERTIES RESIDUE_CLASS1_IS_UNKNOWN, RESIDUE_CLASS2_IS_NONPOLAR, # PROPERTIES RESIDUE_CLASS2_IS_POLAR, RESIDUE_CLASS2_IS_BASIC, # PROPERTIES RESIDUE_CLASS2_IS_ACIDIC, RESIDUE_CLASS2_IS_UNKNOWN, # PROPERTIES SECONDARY_STRUCTURE1_IS_3HELIX, SECONDARY_STRUCTURE1_IS_4HELIX, # PROPERTIES SECONDARY_STRUCTURE1_IS_5HELIX, SECONDARY_STRUCTURE1_IS_BRIDGE, # PROPERTIES SECONDARY_STRUCTURE1_IS_STRAND, SECONDARY_STRUCTURE1_IS_TURN, # PROPERTIES SECONDARY_STRUCTURE1_IS_BEND, SECONDARY_STRUCTURE1_IS_COIL, # PROPERTIES SECONDARY_STRUCTURE1_IS_HET, SECONDARY_STRUCTURE1_IS_UNKNOWN, # PROPERTIES SECONDARY_STRUCTURE2_IS_HELIX, SECONDARY_STRUCTURE2_IS_BETA, # PROPERTIES SECONDARY_STRUCTURE2_IS_COIL, SECONDARY_STRUCTURE2_IS_HET, # PROPERTIES SECONDARY_STRUCTURE2_IS_UNKNOWN # SHELLS 6 # SHELL_WIDTH 1.25 # VERBOSITY 0 Env_2ydf_0 0 1 0 0 0 0 0 0 0 0 0 0 0 -0.1102 1 1 0 0 0 0 0 0 0 0 0 0 33.51 0 0 0 0 1 1 73 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 2 0 1 0 0 0 0 0 0 0 0 0 0.4829 4 3 1 0 0 0 0 1 0 0 0 3 114.667 0 0 0 0 0 2 292 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 4 0 0 0 0 0 4 0 0 0 0 0 0 0 0 4 0 0 0 0 1 2 0 1 0 0 0 3 0 0 0 0 0 -2.4068 7 3 1 3 0 0 0 1 0 3 0 5 149.149 0 0 0 0 -2 6 471 0 0 1 0 0 1 1 0 0 0 3 0 0 1 0 0 0 0 0 0 0 0 4 1 2 0 4 2 0 1 0 0 7 0 0 0 0 0 0 0 0 7 0 0 0 0 3 5 2 2 0 0 0 1 0 0 0 0 0 -0.3649 13 10 2 1 0 0 0 2 0 1 2 9 360.89 0 0 0 0 1 12 793 0 0 3 0 1 1 4 0 0 0 1 0 0 3 0 0 0 0 0 0 0 0 4 4 5 0 4 5 0 4 0 0 13 0 0 0 0 0 0 0 0 13 0 0 0 0 3 7 2 4 0 0 0 2 0 0 0 0 0 -1.175 18 12 4 2 0 0 0 4 0 2 2 8 446.166 0.333 0.333 0 0.333 1 21 935 0 0 3 0 3 3 3 0 0 0 1 0 0 5 0 0 0 0 0 0 0 0 6 3 9 0 6 9 0 3 0 0 18 0 0 0 0 0 0 0 0 18 0 0 0 0 3 12 4 2 1 0 0 3 2 0 0 0 0 -4.4707 27 19 3 5 0 0 0 2.5 0.5 4 4 11 718.251 0.999 0.666 0.333 0.999 3 40 1718 1 1 1 0 1 5 5 0 0 1 4 2 0 6 0 0 0 0 0 0 0 0 12 8 7 0 12 7 3 5 0 0 27 0 0 0 0 0 0 0 0 27 0 0 0 0 # 15.964 6.674 -18.207 # 2ydf_A_2004_IO3_394_L_1_A Env_2ydf_1 1 0 0 1 0 0 0 1 0 0 0 0 0 -0.7992 3 1 1 1 0 0 0 1 0 1 0 0 56.502 0 0 0 0 -2 8 96 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 3 0 0 0 0 3 0 0 0 0 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 -0.204 1 1 0 0 0 0 0 0 0 0 0 0 33.51 0 0 0 0 1 1 32 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 1 0 0 0 0 0 -0.9693 3 1 1 1 0 0 0 1 0 1 0 3 59.141 0 0 0 0 -2 0 159 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3 0 0 3 0 0 0 0 3 0 0 0 0 0 0 0 0 3 0 0 0 0 6 3 5 3 0 0 0 2 0 1 0 0 0 -1.4422 20 14 3 3 0 0 1 3 0 2 6 9 495.239 0 0 0 0 1 39 1020 1 0 2 0 0 4 0 0 0 0 1 4 0 0 0 0 0 0 8 0 0 0 2 4 14 0 2 14 4 0 0 0 20 0 0 0 0 0 0 0 0 20 0 0 0 0 1 11 0 2 0 0 0 2 0 0 0 0 0 -1.2655 16 12 2 2 0 0 0 2 0 2 0 7 453.382 0 0 0 0 4 16 271 0 0 0 0 0 7 0 0 0 0 4 1 0 2 0 0 0 0 2 0 0 0 6 1 9 0 6 9 1 0 0 0 16 0 0 0 0 0 0 0 0 16 0 0 0 0 5 10 0 4 0 0 0 6 0 0 0 0 0 -3.0698 25 15 4 6 0 0 0 4 0 6 0 16 615.231 0 0 0 0 -3 18 738 3 0 0 0 0 7 2 0 0 0 5 3 1 2 0 0 0 0 1 1 0 0 12 5 8 0 12 8 3 2 0 0 25 0 0 0 0 0 0 0 0 25 0 0 0 0 # 8.623 16.944 -14.512 # 2ydf_A_2004_IO3_405_N_1_A Env_2ydf_2 0 1 0 0 0 0 0 0 0 0 0 0 0 -0.1825 1 1 0 0 0 0 0 0 0 0 0 0 33.51 0 0 0 0 1 1 38 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0.2153 3 2 1 0 0 0 0 1 0 0 0 3 81.157 0 0 0 0 -1 0 114 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 3 0 0 0 0 0 3 0 0 0 0 0 0 0 0 3 0 0 0 0 1 0 0 1 0 0 0 2 0 0 0 0 0 -0.9542 4 1 1 2 0 0 0 1 0 2 0 4 70.635 0 0 0 0 -3 0 81 1 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 3 0 1 0 3 1 0 0 0 0 4 0 0 0 0 0 0 0 0 4 0 0 0 0 2 3 0 1 0 0 0 2 0 0 0 0 0 -0.2816 8 5 1 2 0 0 0 1 0 2 0 8 204.675 0 0 0 0 -3 0 178 0 0 3 0 0 0 0 0 0 0 1 2 0 2 0 0 0 0 0 0 0 0 3 2 3 0 3 3 2 0 0 0 8 0 0 0 0 0 0 0 0 8 0 0 0 0 2 14 3 5 1 0 0 1 0 0 0 0 0 -3.3455 26 19 6 1 0 0 0 5.5 0.5 1 3 9 716.389 0.333 0 0.333 0.333 8 40 856 0 5 1 0 0 4 0 0 0 0 8 0 0 5 0 0 0 0 0 3 0 0 16 5 5 0 16 5 5 0 0 0 26 0 0 0 0 0 0 0 0 26 0 0 0 0 3 14 4 2 1 0 0 3 0 0 0 0 0 -3.4016 27 21 3 3 0 0 0 2 1 3 3 9 750.508 0.333 0 0.333 0.333 7 47 1064 0 3 3 0 0 1 0 0 0 0 10 3 0 3 0 0 0 0 1 3 0 0 16 6 5 0 16 5 6 0 0 0 27 0 0 0 0 0 0 0 0 27 0 0 0 0 # 9.883 10.992 -18.264 # 2ydf_A_2004_IO3_406_A_1_A Env_2ydf_3 0 1 0 0 0 0 0 0 0 0 0 0 0 0.2985 1 1 0 0 0 0 0 0 0 0 0 0 33.51 0 0 0 0 1 1 21 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3 0 1 0 0 0 0 0 0 0 0 0 -1.1414 4 3 1 0 0 0 0 1 0 0 0 2 114.667 0 0 0 0 1 4 84 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 4 0 0 0 4 0 0 0 0 0 4 0 0 0 0 0 0 0 0 4 0 0 0 0 2 0 0 1 0 0 0 2 0 0 0 0 0 -0.2893 5 2 1 2 0 0 0 1 0 2 0 5 104.145 0 0 0 0 -3 0 173 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 2 0 0 4 1 0 0 4 0 1 0 0 0 5 0 0 0 0 0 0 0 0 5 0 0 0 0 2 5 0 0 0 0 0 2 0 0 0 0 0 -0.9544 9 7 0 2 0 0 0 0 0 2 0 7 257.558 0 0 0 0 0 5 244 2 1 2 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 1 0 0 6 1 2 0 6 2 1 0 0 0 9 0 0 0 0 0 0 0 0 9 0 0 0 0 2 18 0 5 0 0 0 2 0 1 0 0 0 -3.2108 28 20 5 3 0 0 1 5 0 2 0 11 781.03 0 0 0 0 5 34 752 2 4 1 0 0 0 0 0 0 0 12 3 0 0 0 0 3 0 1 2 0 0 16 7 5 0 16 5 7 0 0 0 28 0 0 0 0 0 0 0 0 28 0 0 0 0 4 15 0 5 0 1 0 3 0 0 0 0 0 -3.2438 28 19 6 3 0 0 0 5 1 3 0 17 775.367 1 0 1 1 2 23 801 0 1 2 0 0 1 0 0 0 0 7 9 0 0 0 0 3 0 2 3 0 0 10 10 8 0 10 8 10 0 0 0 28 0 0 0 0 0 0 0 0 28 0 0 0 0 # 4.685 13.081 -20.614 # 2ydf_A_2004_IO3_409_V_1_A Env_2ydf_4 0 0 1 0 0 0 0 0 0 0 0 0 0 0.8076 1 1 0 0 0 0 0 0 0 0 0 0 20.579 0.333 0 0.333 0.333 0 5 93 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 3 0 0 0 0 0 0 0 0 -2.2062 4 1 3 0 0 0 0 1 2 0 0 0 102.947 0.666 0 0.666 0.666 -3 19 372 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 4 0 0 0 4 0 0 0 0 0 0 0 0 4 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0.039 1 1 0 0 0 0 0 0 0 0 0 0 33.51 0 0 0 0 1 2 93 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 -1.5656 4 3 1 0 0 0 0 1 0 0 1 0 117.97 0 0 0 0 2 11 157 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 1 1 2 0 1 2 1 0 0 0 4 0 0 0 0 0 0 0 0 4 0 0 0 0 4 6 1 1 0 1 0 2 0 1 0 0 0 -0.8424 16 11 2 3 0 0 1 1 1 2 2 6 423.551 1 0 1 1 0 34 435 2 2 2 0 0 0 0 0 0 0 5 2 0 0 0 0 0 0 3 0 0 0 7 4 5 0 7 5 4 0 0 0 16 0 0 0 0 0 0 0 0 16 0 0 0 0 1 10 5 2 0 0 0 3 0 1 0 0 0 -4.3032 22 16 2 4 0 0 1 2 0 3 5 9 575.186 0 0 0 0 5 33 651 2 2 1 0 0 0 0 0 0 0 4 1 0 2 0 4 0 0 6 0 0 0 8 3 11 0 8 11 3 0 0 0 22 0 0 0 0 0 0 0 0 22 0 0 0 0 # 7.736 4.857 -19.222 # 2ydf_A_2004_IO3_410_R_1_A Env_2ydf_5 0 0 0 0 0 1 0 0 0 0 0 0 0 -0.3853 1 0 1 0 0 0 0 0 1 0 0 0 33.51 1 0 1 1 1 5 45 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 -0.062 2 2 0 0 0 0 0 0 0 0 0 0 67.02 0 0 0 0 0 7 90 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 2 0 0 0 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 -1.1427 2 0 0 2 0 0 0 0 0 2 0 2 22.988 0 0 0 0 -2 0 42 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 2 0 0 0 2 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 1 1 0 0 3 4 0 0 0 0 0 1 0 0 0 0 0 0.9828 8 7 0 1 0 0 0 0 0 1 0 5 246.064 0 0 0 0 2 5 558 1 0 0 0 0 0 0 0 0 0 0 4 0 0 1 0 1 0 0 1 0 0 3 4 1 0 3 1 4 0 0 0 3 0 0 0 3 0 2 0 0 3 3 2 0 0 1 9 0 4 0 0 0 2 0 1 0 0 0 -3.9087 17 10 4 3 0 0 1 4 0 2 0 11 431.793 0 0 0 0 -3 11 1042 2 0 0 0 0 0 0 0 0 0 1 5 0 0 1 0 5 0 0 3 0 0 7 5 5 0 7 5 5 0 0 0 6 0 0 0 3 0 8 0 0 6 3 8 0 0 4 16 0 3 0 0 0 3 1 0 0 0 0 -1.846 27 20 3 4 0 0 0 3 0 3.5 0 13 761.23 0.333 0.333 0 0.333 6 25 1400 1 4 0 0 0 0 2 0 0 0 2 7 0 0 2 0 1 0 0 8 0 0 13 13 1 0 13 1 11 2 0 0 16 0 0 0 3 0 8 0 0 16 3 8 0 0 # 3.516 11.753 -26.623 # 2ydf_A_2004_IO3_413_K_1_A Env_2ydf_6 0 1 0 0 0 0 0 0 0 0 0 0 0 -0.1102 1 1 0 0 0 0 0 0 0 0 0 0 33.51 0 0 0 0 1 1 9 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3 0 1 0 0 0 0 0 0 0 0 0 -0.5263 4 3 1 0 0 0 0 1 0 0 0 2 114.667 0 0 0 0 1 5 36 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 4 0 0 0 0 0 4 0 0 0 0 0 0 0 0 4 0 0 0 0 2 1 0 1 0 0 0 1 0 0 0 0 0 -0.1334 5 3 1 1 0 0 0 1 0 1 0 4 126.161 0 0 0 0 -1 3 140 0 0 0 0 0 1 0 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 3 1 1 0 3 1 1 0 0 0 5 0 0 0 0 0 0 0 0 5 0 0 0 0 3 4 0 1 0 0 0 4 0 0 0 0 0 -1.7498 12 7 1 4 0 0 0 1 0 4 0 11 294.683 0 0 0 0 -4 3 906 0 0 0 0 0 3 2 0 0 0 1 4 0 0 0 0 2 0 0 0 0 0 1 6 5 0 1 5 4 2 0 0 10 0 0 0 0 0 2 0 0 10 0 2 0 0 2 16 0 6 0 0 0 1 0 0 0 0 0 -3.0289 25 18 6 1 0 0 0 6 0 1 0 11 699.496 0 0 0 0 7 24 1355 4 0 0 0 0 1 2 0 0 0 4 4 2 0 0 0 2 0 0 6 0 0 16 6 3 0 16 3 4 2 0 0 20 0 0 0 0 0 5 0 0 20 0 5 0 0 2 16 0 1 0 0 0 3 0 1 0 0 0 -1.9544 23 18 1 4 0 0 1 1 0 3 0 13 668.956 0 0 0 0 3 14 1125 4 0 0 0 0 0 1 0 0 0 5 2 1 0 0 0 3 0 0 7 0 0 17 3 3 0 17 3 2 1 0 0 18 0 0 0 0 0 5 0 0 18 0 5 0 0 # 5.73 18.492 -23.48 # 2ydf_A_2004_IO3_544_L_1_A