Running runAnalysis...
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/bin/MATLAB/MATLAB_Compiler_Runtime/v714/runtime/glnxa64:/usr/local/bin/MATLAB/MATLAB_Compiler_Runtime/v714/bin/glnxa64:/usr/local/bin/MATLAB/MATLAB_Compiler_Runtime/v714/sys/os/glnxa64:/usr/local/bin/MATLAB/MATLAB_Compiler_Runtime/v714/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/usr/local/bin/MATLAB/MATLAB_Compiler_Runtime/v714/sys/java/jre/glnxa64/jre/lib/amd64/server:/usr/local/bin/MATLAB/MATLAB_Compiler_Runtime/v714/sys/java/jre/glnxa64/jre/lib/amd64/client:/usr/local/bin/MATLAB/MATLAB_Compiler_Runtime/v714/sys/java/jre/glnxa64/jre/lib/amd64

==============
=== status ===
==============
Job Id: 19102.covertlab-cluster.stanford.edu
    Job_Name = runAnalysis-2011_10_26_19_26_15-1
    Job_Owner = WholeCell@covertlab-cluster.stanford.edu
    resources_used.cput = 00:03:30
    resources_used.mem = 1607772kb
    resources_used.vmem = 2856396kb
    resources_used.walltime = 00:15:24
    job_state = R
    queue = default
    server = covertlab-cluster.stanford.edu
    Checkpoint = u
    ctime = Wed Oct 26 19:35:45 2011
    depend = beforeany:19103.covertlab-cluster.stanford.edu@covertlab-cluster.
	stanford.edu
    Error_Path = covertlab-cluster.stanford.edu:/home/projects/WholeCell/simul
	ation/output/runSimulation/2011_10_26_19_26_15/err.analysis-1.log
    exec_host = compute-0-7/15+compute-0-7/14+compute-0-7/13+compute-0-7/12+co
	mpute-0-7/11+compute-0-7/10+compute-0-7/9+compute-0-7/8+compute-0-7/7+
	compute-0-7/6+compute-0-7/5+compute-0-7/4+compute-0-7/3+compute-0-7/2+
	compute-0-7/1+compute-0-7/0
    group_list = WholeCell
    Hold_Types = n
    Join_Path = n
    Keep_Files = n
    Mail_Points = a
    Mail_Users = wholecell+pbs@lists.stanford.edu
    mtime = Fri Nov 11 14:51:26 2011
    Output_Path = covertlab-cluster.stanford.edu:/home/projects/WholeCell/simu
	lation/output/runSimulation/2011_10_26_19_26_15/out.analysis-1.log
    Priority = 0
    qtime = Wed Oct 26 19:35:45 2011
    Rerunable = True
    Resource_List.mem = 22gb
    Resource_List.nodect = 1
    Resource_List.nodes = 1:ppn=16
    Resource_List.vmem = 22gb
    Resource_List.walltime = 48:00:00
    session_id = 20367
    Variable_List = PBS_O_HOME=/home/users/jkarr,PBS_O_LANG=en_US.iso885915,
	PBS_O_LOGNAME=root,PBS_O_PATH=/usr/bin:/bin,
	PBS_O_MAIL=/var/mail/jkarr,PBS_O_SHELL=/bin/bash,
	PBS_SERVER=covertlab-cluster.stanford.edu,
	PBS_O_WORKDIR=/home/projects/WholeCell/simulation,
	PBS_O_QUEUE=default,PBS_O_HOST=covertlab-cluster.stanford.edu
    etime = Thu Nov 10 12:33:15 2011
    submit_args = /home/projects/WholeCell/simulation/output/runSimulation/201
	1_10_26_19_26_15/job.analysis_1.sh
    umask = 2
    start_time = Fri Nov 11 14:51:26 2011
    Walltime.Remaining = 17183
    start_count = 1
    fault_tolerant = False
    proxy_user = WholeCell