Index of /WholeCell/simulation/output/runSimulation/2011_10_25_01_45_44

	Name	Last modified	Size	Description
	Parent Directory		-
	summary.toc	2012-03-20 17:36	7.4K
	summary.tex	2012-03-20 17:36	32K
	summary.pdf	2012-03-20 17:36	188M
	summary.out	2012-03-20 17:36	5.8K
	summary.log	2012-03-20 17:36	67K
	summary.html	2012-03-20 17:36	2.1K
	summary.aux	2012-03-20 17:36	9.4K
	summary-CellOverview-Lines9.pdf	2012-03-20 17:36	6.1M
	summary-CellOverview-Lines8.pdf	2012-03-20 17:36	4.5M
	summary-CellOverview-Lines7.pdf	2012-03-20 17:36	1.9M
	summary-CellOverview-Lines6.pdf	2012-03-20 17:36	8.7M
	summary-CellOverview-Lines5.pdf	2012-03-20 17:36	11M
	summary-CellOverview-Lines4.pdf	2012-03-20 17:36	25M
	summary-CellOverview-Lines3.pdf	2012-03-20 17:36	1.3M
	summary-CellOverview-Lines2.pdf	2012-03-20 17:36	1.0M
	summary-CellOverview-Lines1.pdf	2012-03-20 17:36	3.8M
	summary-CellOverview-InitialGrowthRateVsEndTimes.pdf	2012-03-20 17:36	5.5K
	summary-CellOverview-FinalGrowthRateVsEndTimes.pdf	2012-03-20 17:36	5.6K
	singleCell-RibosomesGenomicCoordinates.pdf	2012-03-20 17:36	2.1M
	singleCell-RibosomesGenomicCoordinates.mat	2012-03-20 17:36	4.7M
	singleCell-Ribosomes.pdf	2012-03-20 17:36	2.1M
	singleCell-Ribosomes.mat	2012-03-20 17:36	4.7M
	singleCell-MetabolitesNormalized.pdf	2012-03-20 17:36	2.0M
	singleCell-MetabolitesNormalized.mat	2012-03-20 17:36	8.7M
	singleCell-Metabolites.pdf	2012-03-20 17:36	2.6M
	singleCell-Metabolites.mat	2012-03-20 17:36	8.7M
	singleCell-MassNormalized.pdf	2012-03-20 17:36	261K
	singleCell-MassNormalized.mat	2012-03-20 17:36	1.1M
	singleCell-Mass.pdf	2012-03-20 17:36	235K
	singleCell-Mass.mat	2012-03-20 17:36	1.1M
	singleCell-Growth.pdf	2012-03-20 17:36	1.1M
	singleCell-Growth.mat	2012-03-20 17:36	2.8M
	processMetaboliteUsage-GTP-Usages.pdf	2012-03-20 17:36	6.3M
	processMetaboliteUsage-GTP-Requirements.pdf	2012-03-20 17:36	3.8M
	processMetaboliteUsage-GTP-Allocations.pdf	2012-03-20 17:36	5.6M
	processMetaboliteUsage-Expected-GTP-Usages.pdf	2012-03-20 17:36	12K
	processMetaboliteUsage-Expected-ATP-Usages.pdf	2012-03-20 17:36	12K
	processMetaboliteUsage-ATP-Usages.pdf	2012-03-20 17:36	10M
	processMetaboliteUsage-ATP-Requirements.pdf	2012-03-20 17:36	7.1M
	processMetaboliteUsage-ATP-Allocations.pdf	2012-03-20 17:36	10M
	population-Warnings.xls	2012-03-20 17:36	37
	population-Warnings.pdf	2012-03-20 17:36	4.1K
	population-Warnings.mat	2012-03-20 17:36	195
	population-UnsynchronizedPopulation.pdf	2012-03-20 17:36	1.7M
	population-UnsynchronizedPopulation.mat	2012-03-20 17:36	34M
	population-SmcSpacing.pdf	2012-03-20 17:36	3.6M
	population-SmcSpacing.mat	2012-03-20 17:36	6.4M
	population-SSBs.pdf	2012-03-20 17:36	5.1M
	population-SSBs.mat	2012-03-20 17:36	2.3M
	population-RnaSynthesisDuration.pdf	2012-03-20 17:36	63K
	population-RnaSynthesisDuration.mat	2012-03-20 17:36	806K
	population-RnaSynthesis.pdf	2012-03-20 17:36	3.9M
	population-RnaSynthesis.mat	2012-03-20 17:36	28M
	population-RnaPolymerases.pdf	2012-03-20 17:36	7.6M
	population-RnaPolymerases.mat	2012-03-20 17:36	75M
	population-Ribosomes.pdf	2012-03-20 17:36	85K
	population-Ribosomes.mat	2012-03-20 17:36	756K
	population-Replication.pdf	2012-03-20 17:36	42K
	population-Replication.mat	2012-03-20 17:36	25M
	population-ProteinSynthesisDuration.pdf	2012-03-20 17:36	138K
	population-ProteinSynthesisDuration.mat	2012-03-20 17:36	1.0M
	population-ProteinSynthesis.pdf	2012-03-20 17:36	8.9M
	population-ProteinSynthesis.mat	2012-03-20 17:36	47M
	population-NucleotideDistribution.xls	2012-03-20 17:36	540
	population-NucleotideDistribution.pdf	2012-03-20 17:36	11M
	population-NucleotideDistribution.mat	2012-03-20 17:36	289M
	population-MetaboliteConcentrations.pdf	2012-03-20 17:36	7.6K
	population-MetaboliteConcentrations.mat	2012-03-20 17:36	887
	population-Metabolism.xls	2012-03-20 17:36	189K
	population-Metabolism.pdf	2012-03-20 17:36	528K
	population-Metabolism.mat	2012-03-20 17:36	1.0M
	population-MassDistribution.pdf	2012-03-20 17:36	6.2M
	population-MassDistribution.mat	2012-03-20 17:36	141M
	population-MacromoleculeHalfLives.pdf	2012-03-20 17:36	40K
	population-MacromoleculeHalfLives.mat	2012-03-20 17:36	14K
	population-MacromolecularComplexes.pdf	2012-03-20 17:36	95K
	population-MacromolecularComplexes.mat	2012-03-20 17:36	7.2K
	population-ImmuneActivation.pdf	2012-03-20 17:36	391K
	population-ImmuneActivation.mat	2012-03-20 17:36	3.5M
	population-GeneCopyNumber.pdf	2012-03-20 17:36	1.0M
	population-GeneCopyNumber.mat	2012-03-20 17:36	109M
	population-DnaRepair.pdf	2012-03-20 17:36	1.4M
	population-DnaRepair.mat	2012-03-20 17:36	9.3M
	population-CellShape.pdf	2012-03-20 17:36	1.5M
	population-CellShape.mat	2012-03-20 17:36	101M
	population-CellMassDistribution.pdf	2012-03-20 17:36	4.3K
	population-CellMassDistribution.mat	2012-03-20 17:36	2.2K
	population-CellCyclePhases.pdf	2012-03-20 17:36	7.7K
	population-CellCyclePhases.mat	2012-03-20 17:36	1.4M
	population-BlockedDecayEvents.pdf	2012-03-20 17:36	7.0K
	population-BlockedDecayEvents.mat	2012-03-20 17:36	3.2K
	population-AminoAcidCounts.pdf	2012-03-20 17:36	11M
	population-AminoAcidCounts.mat	2012-03-20 17:36	229M
	pbsid	2012-03-20 17:36	6
	out.analysis-9.log	2012-03-20 17:36	2.1K
	out.analysis-8.log	2012-03-20 17:36	3.4K
	out.analysis-7.log	2012-03-20 17:36	693
	out.analysis-6.log	2012-03-20 17:36	120K
	out.analysis-5.log	2012-03-20 17:36	3.0K
	out.analysis-4.log	2012-03-20 17:36	3.0K
	out.analysis-3.log	2012-03-20 17:36	3.5K
	out.analysis-2.log	2012-03-20 17:36	3.9K
	out.analysis-1.log	2012-03-20 17:36	3.4K
	matlab.animation.log	2012-03-20 17:36	670
	matlab.analysis.log	2012-03-20 17:36	118K
	job.analysis_9.sh	2012-03-20 17:36	1.8K
	job.analysis_8.sh	2012-03-20 17:36	2.8K
	job.analysis_7.sh	2012-03-20 17:36	2.8K
	job.analysis_6.sh	2012-03-20 17:36	2.8K
	job.analysis_5.sh	2012-03-20 17:36	2.8K
	job.analysis_4.sh	2012-03-20 17:36	2.8K
	job.analysis_3.sh	2012-03-20 17:36	2.8K
	job.analysis_2.sh	2012-03-20 17:36	2.8K
	job.analysis_1.sh	2012-03-20 17:36	2.8K
	initialVsCumulativeGrowth.pdf	2012-03-20 17:35	9.6K
	initialGrowthVsCellCyclePhaseTimes.pdf	2012-03-20 17:35	21K
	initialGrowthVsCellCyclePhaseDurations.pdf	2012-03-20 17:35	21K
	initialAndFinalStates.html	2012-03-20 17:35	176K
	errors.html	2012-03-20 17:35	67
	err.analysis-9.log	2012-03-20 17:35	0
	err.analysis-8.log	2012-03-20 17:35	0
	err.analysis-7.log	2012-03-20 17:35	59
	err.analysis-6.log	2012-03-20 17:35	338
	err.analysis-5.log	2012-03-20 17:35	0
	err.analysis-4.log	2012-03-20 17:35	0
	err.analysis-3.log	2012-03-20 17:35	0
	err.analysis-2.log	2012-03-20 17:35	0
	err.analysis-1.log	2012-03-20 17:35	0
	cumulativeGrowthVsCellCyclePhaseTimes.pdf	2012-03-20 17:35	22K
	cumulativeGrowthVsCellCyclePhaseDurations.pdf	2012-03-20 17:35	22K
	conditions.xml	2012-03-20 17:35	1.0K
	cellCyclePhaseLengths.pdf	2012-03-20 17:35	16K
	cellCyclePhaseDurations.pdf	2012-03-20 17:35	16K
	bin/	2012-03-20 17:36	-
	TranslationAnalysis-Pauses.pdf	2012-03-20 17:36	9.7K
	TranslationAnalysis-PauseDistribution.pdf	2012-03-20 17:36	3.5K
	TranslationAnalysis-MonomerSynthesis.pdf	2012-03-20 17:36	25K
	SimulationStructure.xls	2012-03-20 17:36	13K
	SimulationStructure-ProcessSharedMetabolites.pdf	2012-03-20 17:36	4.3K
	SimulationStructure-ProcessMetabolites.pdf	2012-03-20 17:36	4.9K
	SimulationStructure-ProcessMetaboliteSharing.pdf	2012-03-20 17:36	4.5K
	SimulationStructure-ProcessGeneProducts.pdf	2012-03-20 17:36	4.5K
	ProcessMetaboliteUsages-GTP.mat	2012-03-20 17:36	156K
	ProcessMetaboliteUsages-ATP.mat	2012-03-20 17:36	156K
	ProcessMetaboliteRequirements-GTP.mat	2012-03-20 17:36	156K
	ProcessMetaboliteRequirements-ATP.mat	2012-03-20 17:36	156K
	ProcessMetaboliteAllocations-GTP.mat	2012-03-20 17:36	156K
	ProcessMetaboliteAllocations-ATP.mat	2012-03-20 17:36	156K
	FBA.xls	2012-03-20 17:35	317K
	FBA-NetworkReduction.pdf	2012-03-20 17:35	118K
	DNADamage.xls	2012-03-20 17:35	11K
	Constants.xls	2012-03-20 17:35	104K
	Constants-Experimental_Vs_Calculated_TRNA_Expression.pdf	2012-03-20 17:35	4.6K
	Constants-Experimental_Vs_Calculated_RNA_Weight_Fractions.pdf	2012-03-20 17:35	3.3K
	Constants-Experimental_Vs_Calculated_NMP_Composition.pdf	2012-03-20 17:35	3.1K
	Constants-Experimental_Vs_Calculated_Monomer_Expression.pdf	2012-03-20 17:35	16K
	Constants-Experimental_Vs_Calculated_Gene_Expression.pdf	2012-03-20 17:35	9.2K
	Constants-Experimental_Vs_Calculated_Gene_Decay_Rates.pdf	2012-03-20 17:35	17K
	Constants-Experimental_Vs_Calculated_AA_Composition.pdf	2012-03-20 17:35	4.1K
	Constants-Experimental_Calculated_TRNA_Expression_Ratios.pdf	2012-03-20 17:35	4.3K
	Constants-Experimental_Calculated_RNA_Weight_Fraction_Ratios.pdf	2012-03-20 17:35	3.5K
	Constants-Experimental_Calculated_NMP_Composition_Ratios.pdf	2012-03-20 17:35	3.5K
	Constants-Experimental_Calculated_Monomer_Expression_Ratios.pdf	2012-03-20 17:35	13K
	Constants-Experimental_Calculated_Gene_Expression_Ratios.pdf	2012-03-20 17:35	16K
	Constants-Experimental_Calculated_Gene_Decay_Rate_Ratios.pdf	2012-03-20 17:35	13K
	Constants-Experimental_Calculated_AA_Composition_Ratios.pdf	2012-03-20 17:35	3.9K
	ChromosomeSpaceTimePlot-SpaceTimeOverlay.pdf	2012-03-20 17:35	8.7M
	ChromosomeSpaceTimePlot-Ring.pdf	2012-03-20 17:35	5.3K
	ChromosomeSpaceTimePlot-CircularDensity.pdf	2012-03-20 17:35	304K
	ChromosomePositionHistogram-2.pdf	2012-03-20 17:35	119K
	ChromosomePositionHistogram-1.pdf	2012-03-20 17:35	156K
	CellState.xls	2012-03-20 17:35	1.9K
	CellState-OnChromosome.pdf	2012-03-20 17:35	105K
	BiomassCompositionProduction.xls	2012-03-20 17:35	117K
	BiomassCompositionProduction.pdf	2012-03-20 17:35	6.3K
	BiomassCompositionProduction-dNMPComposition.pdf	2012-03-20 17:35	3.7K
	BiomassCompositionProduction-WeightFractions.pdf	2012-03-20 17:35	3.8K
	BiomassCompositionProduction-NMPComposition.pdf	2012-03-20 17:35	3.5K
	BiomassCompositionProduction-AAComposition.pdf	2012-03-20 17:35	4.3K
	128/	2012-03-20 17:39	-
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	24.7z	2012-03-09 16:11	425M
	23/	2012-03-20 17:37	-
	23.7z	2012-03-12 11:46	436M
	22/	2012-03-20 17:37	-
	22.7z	2012-03-12 14:21	397M
	21/	2012-03-20 17:37	-
	21.7z	2012-03-09 16:09	408M
	20/	2012-03-20 17:37	-
	20.7z	2012-03-09 16:04	503M
	19/	2012-03-20 17:37	-
	19.7z	2012-03-12 11:40	396M
	18/	2012-03-20 17:37	-
	18.7z	2012-03-12 14:15	457M
	17/	2012-03-20 17:37	-
	17.7z	2012-03-09 16:01	419M
	16/	2012-03-20 17:37	-
	16.7z	2012-03-09 15:54	553M
	15/	2012-03-20 17:37	-
	15.7z	2012-03-12 11:35	430M
	14/	2012-03-20 17:37	-
	14.7z	2012-03-12 14:05	384M
	13/	2012-03-20 17:37	-
	13.7z	2012-03-09 15:53	459M
	12/	2012-03-20 17:37	-
	12.7z	2012-03-09 15:44	420M
	11/	2012-03-20 17:37	-
	11.7z	2012-03-12 11:31	388M
	10/	2012-03-20 17:36	-
	10.7z	2012-03-12 13:56	417M
	9/	2012-03-20 17:36	-
	9.7z	2012-03-09 15:44	389M
	8/	2012-03-20 17:36	-
	8.7z	2012-03-09 15:37	402M
	7/	2012-03-20 17:36	-
	7.7z	2012-03-12 11:24	435M
	6/	2012-03-20 17:36	-
	6.7z	2012-03-12 13:47	395M
	5/	2012-03-20 17:36	-
	5.7z	2012-03-09 15:37	417M
	4/	2012-03-20 17:36	-
	4.7z	2012-03-09 15:29	443M
	3/	2012-03-20 17:36	-
	3.7z	2012-03-12 11:16	396M
	2/	2012-03-20 17:36	-
	2.7z	2012-03-12 13:40	459M
	1/	2012-03-20 17:36	-
	1.7z	2012-03-09 15:29	419M