Running runAnalysis...
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/bin/MATLAB/MATLAB_Compiler_Runtime/v714/runtime/glnxa64:/usr/local/bin/MATLAB/MATLAB_Compiler_Runtime/v714/bin/glnxa64:/usr/local/bin/MATLAB/MATLAB_Compiler_Runtime/v714/sys/os/glnxa64:/usr/local/bin/MATLAB/MATLAB_Compiler_Runtime/v714/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/usr/local/bin/MATLAB/MATLAB_Compiler_Runtime/v714/sys/java/jre/glnxa64/jre/lib/amd64/server:/usr/local/bin/MATLAB/MATLAB_Compiler_Runtime/v714/sys/java/jre/glnxa64/jre/lib/amd64/client:/usr/local/bin/MATLAB/MATLAB_Compiler_Runtime/v714/sys/java/jre/glnxa64/jre/lib/amd64
{Warning: Excel not available, saving in csv format} 
> In PrintUtil>PrintUtil.printToFile at 54
  In CellState>CellState.run at 19
  In runAnalysis at 91
{Warning: Unable to make secondaryReplicationInitiation plot:
Error using ==> set
Bad property value found.
Object Name :  axes
Property Name : 'XLim'
Values must be increasing and non-NaN.

Error in ==> xlim at 44



Error in ==> PlotUtil>PlotUtil.multiElementPlotHelper at 236



Error in ==> PlotUtil>PlotUtil.multiElementPlot at 175



Error in ==> Population>Population.secondaryReplicationInitiation at 4474



Error in ==> Population>Population.run at 45



Error in ==> runAnalysis at 91


} 
> In Population>Population.run at 65
  In runAnalysis at 91
{Warning: Excel not available, saving in csv format} 
> In PrintUtil>PrintUtil.printToFile at 54
  In Population>Population.run at 59
  In runAnalysis at 91

==============
=== status ===
==============
Job Id: 16979.covertlab-cluster.stanford.edu
    Job_Name = runAnalysis-2011_10_19_02_53_45-2
    Job_Owner = WholeCell@covertlab-cluster.stanford.edu
    resources_used.cput = 02:14:51
    resources_used.mem = 3423792kb
    resources_used.vmem = 5497560kb
    resources_used.walltime = 01:04:20
    job_state = R
    queue = default
    server = covertlab-cluster.stanford.edu
    Checkpoint = u
    ctime = Wed Oct 19 03:04:05 2011
    depend = beforeany:16986.covertlab-cluster.stanford.edu@covertlab-cluster.
	stanford.edu
    Error_Path = covertlab-cluster.stanford.edu:/home/projects/WholeCell/simul
	ation/output/runSimulation/2011_10_19_02_53_45/err.analysis-2.log
    exec_host = compute-0-6/15+compute-0-6/14+compute-0-6/13+compute-0-6/12+co
	mpute-0-6/11+compute-0-6/10+compute-0-6/9+compute-0-6/8+compute-0-6/7+
	compute-0-6/6+compute-0-6/5+compute-0-6/4+compute-0-6/3+compute-0-6/2+
	compute-0-6/1+compute-0-6/0
    group_list = WholeCell
    Hold_Types = n
    Join_Path = n
    Keep_Files = n
    Mail_Points = a
    Mail_Users = wholecell+pbs@lists.stanford.edu
    mtime = Mon Oct 24 19:17:20 2011
    Output_Path = covertlab-cluster.stanford.edu:/home/projects/WholeCell/simu
	lation/output/runSimulation/2011_10_19_02_53_45/out.analysis-2.log
    Priority = 0
    qtime = Wed Oct 19 03:04:05 2011
    Rerunable = True
    Resource_List.mem = 22gb
    Resource_List.nodect = 1
    Resource_List.nodes = 1:ppn=16
    Resource_List.vmem = 22gb
    Resource_List.walltime = 48:00:00
    session_id = 12360
    Variable_List = PBS_O_HOME=/home/users/jkarr,PBS_O_LANG=en_US.iso885915,
	PBS_O_LOGNAME=root,PBS_O_PATH=/usr/bin:/bin,
	PBS_O_MAIL=/var/mail/jkarr,PBS_O_SHELL=/bin/bash,
	PBS_SERVER=covertlab-cluster.stanford.edu,
	PBS_O_WORKDIR=/home/projects/WholeCell/simulation,
	PBS_O_QUEUE=default,PBS_O_HOST=covertlab-cluster.stanford.edu
    etime = Sun Oct 23 15:16:15 2011
    submit_args = /home/projects/WholeCell/simulation/output/runSimulation/201
	1_10_19_02_53_45/job.analysis_2.sh
    umask = 2
    start_time = Mon Oct 24 19:17:20 2011
    Walltime.Remaining = 16886
    start_count = 1
    fault_tolerant = False
    proxy_user = WholeCell