Index of /WholeCell/simulation/output/runSimulation/2011_10_19_02_53_45

	Name	Last modified	Size	Description
	Parent Directory		-
	1.7z	2012-03-08 18:56	396M
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	BiomassCompositionProduction-AAComposition.pdf	2012-03-20 16:31	4.3K
	BiomassCompositionProduction-NMPComposition.pdf	2012-03-20 16:31	3.5K
	BiomassCompositionProduction-WeightFractions.pdf	2012-03-20 16:31	3.8K
	BiomassCompositionProduction-dNMPComposition.pdf	2012-03-20 16:31	3.7K
	BiomassCompositionProduction.pdf	2012-03-20 16:31	6.3K
	BiomassCompositionProduction.xls	2012-03-20 16:31	117K
	CellState-OnChromosome.pdf	2012-03-20 16:31	105K
	CellState.xls	2012-03-20 16:31	1.9K
	ChromosomePositionHistogram-1.pdf	2012-03-20 16:31	156K
	ChromosomePositionHistogram-2.pdf	2012-03-20 16:31	121K
	ChromosomeSpaceTimePlot-CircularDensity.pdf	2012-03-20 16:31	304K
	ChromosomeSpaceTimePlot-Ring.pdf	2012-03-20 16:31	6.0K
	ChromosomeSpaceTimePlot-SpaceTimeOverlay.pdf	2012-03-20 16:31	10M
	Constants-Experimental_Calculated_AA_Composition_Ratios.pdf	2012-03-20 16:31	3.9K
	Constants-Experimental_Calculated_Gene_Decay_Rate_Ratios.pdf	2012-03-20 16:31	13K
	Constants-Experimental_Calculated_Gene_Expression_Ratios.pdf	2012-03-20 16:31	16K
	Constants-Experimental_Calculated_Monomer_Expression_Ratios.pdf	2012-03-20 16:31	13K
	Constants-Experimental_Calculated_NMP_Composition_Ratios.pdf	2012-03-20 16:31	3.5K
	Constants-Experimental_Calculated_RNA_Weight_Fraction_Ratios.pdf	2012-03-20 16:31	3.5K
	Constants-Experimental_Calculated_TRNA_Expression_Ratios.pdf	2012-03-20 16:31	4.3K
	Constants-Experimental_Vs_Calculated_AA_Composition.pdf	2012-03-20 16:31	4.1K
	Constants-Experimental_Vs_Calculated_Gene_Decay_Rates.pdf	2012-03-20 16:31	17K
	Constants-Experimental_Vs_Calculated_Gene_Expression.pdf	2012-03-20 16:31	9.2K
	Constants-Experimental_Vs_Calculated_Monomer_Expression.pdf	2012-03-20 16:31	16K
	Constants-Experimental_Vs_Calculated_NMP_Composition.pdf	2012-03-20 16:31	3.1K
	Constants-Experimental_Vs_Calculated_RNA_Weight_Fractions.pdf	2012-03-20 16:31	3.3K
	Constants-Experimental_Vs_Calculated_TRNA_Expression.pdf	2012-03-20 16:31	4.6K
	Constants.xls	2012-03-20 16:31	104K
	DNADamage.xls	2012-03-20 16:31	11K
	FBA-NetworkReduction.pdf	2012-03-20 16:31	118K
	FBA.xls	2012-03-20 16:31	317K
	ProcessMetaboliteAllocations-ATP.mat	2012-03-20 16:31	49M
	ProcessMetaboliteAllocations-GTP.mat	2012-03-20 16:31	32M
	ProcessMetaboliteRequirements-ATP.mat	2012-03-20 16:31	45M
	ProcessMetaboliteRequirements-GTP.mat	2012-03-20 16:31	24M
	ProcessMetaboliteUsages-ATP.mat	2012-03-20 16:31	44M
	ProcessMetaboliteUsages-GTP.mat	2012-03-20 16:31	33M
	SimulationStructure-ProcessGeneProducts.pdf	2012-03-20 16:31	4.5K
	SimulationStructure-ProcessMetaboliteSharing.pdf	2012-03-20 16:31	4.5K
	SimulationStructure-ProcessMetabolites.pdf	2012-03-20 16:31	4.9K
	SimulationStructure-ProcessSharedMetabolites.pdf	2012-03-20 16:31	4.3K
	SimulationStructure.xls	2012-03-20 16:31	13K
	TranslationAnalysis-MonomerSynthesis.pdf	2012-03-20 16:31	25K
	TranslationAnalysis-PauseDistribution.pdf	2012-03-20 16:31	3.4K
	TranslationAnalysis-Pauses.pdf	2012-03-20 16:31	14K
	bin/	2012-03-20 16:31	-
	cellCyclePhaseDurations.pdf	2012-03-20 16:31	9.8K
	cellCyclePhaseLengths.pdf	2012-03-20 16:31	9.8K
	conditions.xml	2012-03-20 16:31	1.2K
	cumulativeGrowthVsCellCyclePhaseDurations.pdf	2012-03-20 16:31	13K
	cumulativeGrowthVsCellCyclePhaseTimes.pdf	2012-03-20 16:31	13K
	err.analysis-1.log	2012-03-20 16:31	740
	err.analysis-2.log	2012-03-20 16:31	1.1K
	err.analysis-3.log	2012-03-20 16:31	0
	err.analysis-4.log	2012-03-20 16:31	0
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	err.analysis-6.log	2012-03-20 16:31	0
	err.analysis-7.log	2012-03-20 16:31	59
	err.analysis-8.log	2012-03-20 16:31	0
	err.analysis-9.log	2012-03-20 16:31	0
	errors.html	2012-03-20 16:31	67
	initialAndFinalStates.html	2012-03-20 16:31	90K
	initialGrowthVsCellCyclePhaseDurations.pdf	2012-03-20 16:31	12K
	initialGrowthVsCellCyclePhaseTimes.pdf	2012-03-20 16:31	13K
	initialVsCumulativeGrowth.pdf	2012-03-20 16:31	6.5K
	job.analysis_1.sh	2012-03-20 16:31	2.5K
	job.analysis_2.sh	2012-03-20 16:31	2.5K
	job.analysis_3.sh	2012-03-20 16:31	2.5K
	job.analysis_4.sh	2012-03-20 16:31	2.5K
	job.analysis_5.sh	2012-03-20 16:31	2.5K
	job.analysis_6.sh	2012-03-20 16:31	2.5K
	job.analysis_7.sh	2012-03-20 16:31	2.5K
	job.analysis_8.sh	2012-03-20 16:31	2.5K
	job.analysis_9.sh	2012-03-20 16:31	1.8K
	matlab.analysis.log	2012-03-20 16:31	1.5K
	matlab.animation.log	2012-03-20 16:31	713
	out.analysis-1.log	2012-03-20 16:31	3.5K
	out.analysis-2.log	2012-03-20 16:31	3.7K
	out.analysis-3.log	2012-03-20 16:31	3.5K
	out.analysis-4.log	2012-03-20 16:31	3.0K
	out.analysis-5.log	2012-03-20 16:31	3.0K
	out.analysis-6.log	2012-03-20 16:31	3.7K
	out.analysis-7.log	2012-03-20 16:31	693
	out.analysis-8.log	2012-03-20 16:31	3.4K
	out.analysis-9.log	2012-03-20 16:31	2.1K
	pbsid	2012-03-20 16:31	6
	population-AminoAcidCounts.mat	2012-03-20 16:31	109M
	population-AminoAcidCounts.pdf	2012-03-20 16:31	5.7M
	population-BlockedDecayEvents.mat	2012-03-20 16:31	2.1K
	population-BlockedDecayEvents.pdf	2012-03-20 16:31	6.8K
	population-CellCyclePhases.mat	2012-03-20 16:31	1.4M
	population-CellCyclePhases.pdf	2012-03-20 16:31	7.6K
	population-CellMassDistribution.mat	2012-03-20 16:31	1.3K
	population-CellMassDistribution.pdf	2012-03-20 16:31	4.4K
	population-CellShape.mat	2012-03-20 16:31	51M
	population-CellShape.pdf	2012-03-20 16:31	856K
	population-DnaRepair.mat	2012-03-20 16:31	4.7M
	population-DnaRepair.pdf	2012-03-20 16:31	739K
	population-EnergyProduction.mat	2012-03-20 16:31	51M
	population-EnergyProduction.pdf	2012-03-20 16:31	4.1M
	population-GeneCopyNumber.mat	2012-03-20 16:31	36M
	population-GeneCopyNumber.pdf	2012-03-20 16:31	520K
	population-Growth.mat	2012-03-20 16:31	48M
	population-Growth.pdf	2012-03-20 16:31	2.4M
	population-ImmuneActivation.mat	2012-03-20 16:31	1.8M
	population-ImmuneActivation.pdf	2012-03-20 16:31	202K
	population-MacromolecularComplexes.mat	2012-03-20 16:31	7.2K
	population-MacromolecularComplexes.pdf	2012-03-20 16:31	95K
	population-MacromoleculeExpression.mat	2012-03-20 16:31	349K
	population-MacromoleculeExpression.pdf	2012-03-20 16:31	155K
	population-MacromoleculeHalfLives.mat	2012-03-20 16:31	14K
	population-MacromoleculeHalfLives.pdf	2012-03-20 16:31	39K
	population-MassDistribution.mat	2012-03-20 16:31	70M
	population-MassDistribution.pdf	2012-03-20 16:31	3.5M
	population-Metabolism.mat	2012-03-20 16:31	611K
	population-Metabolism.pdf	2012-03-20 16:31	322K
	population-Metabolism.xls	2012-03-20 16:31	189K
	population-MetaboliteConcentrations.mat	2012-03-20 16:31	886
	population-MetaboliteConcentrations.pdf	2012-03-20 16:31	7.6K
	population-NucleotideDistribution.mat	2012-03-20 16:31	145M
	population-NucleotideDistribution.pdf	2012-03-20 16:31	5.8M
	population-NucleotideDistribution.xls	2012-03-20 16:31	552
	population-ProteinSynthesis.mat	2012-03-20 16:31	23M
	population-ProteinSynthesis.pdf	2012-03-20 16:31	4.5M
	population-ProteinSynthesisDuration.mat	2012-03-20 16:31	538K
	population-ProteinSynthesisDuration.pdf	2012-03-20 16:31	133K
	population-Replication.mat	2012-03-20 16:31	12M
	population-Replication.pdf	2012-03-20 16:31	25K
	population-Ribosomes.mat	2012-03-20 16:31	1.0M
	population-Ribosomes.pdf	2012-03-20 16:31	77K
	population-RnaPolymerases.mat	2012-03-20 16:31	39M
	population-RnaPolymerases.pdf	2012-03-20 16:31	3.8M
	population-RnaSynthesis.mat	2012-03-20 16:31	17M
	population-RnaSynthesis.pdf	2012-03-20 16:31	2.0M
	population-RnaSynthesisDuration.mat	2012-03-20 16:31	403K
	population-RnaSynthesisDuration.pdf	2012-03-20 16:31	63K
	population-SSBs.mat	2012-03-20 16:31	1.2M
	population-SSBs.pdf	2012-03-20 16:31	2.5M
	population-SecondaryReplicationInitiation.mat	2012-03-20 16:31	134K
	population-SecondaryReplicationInitiation.pdf	2012-03-20 16:31	6.4K
	population-SmcSpacing.mat	2012-03-20 16:31	3.1M
	population-SmcSpacing.pdf	2012-03-20 16:31	1.8M
	population-Translation.mat	2012-03-20 16:31	311M
	population-Translation.pdf	2012-03-20 16:31	30M
	population-UnsynchronizedPopulation.mat	2012-03-20 16:31	15M
	population-UnsynchronizedPopulation.pdf	2012-03-20 16:31	944K
	population-Warnings.mat	2012-03-20 16:31	191
	population-Warnings.pdf	2012-03-20 16:31	4.1K
	population-Warnings.xls	2012-03-20 16:31	37
	processMetaboliteUsage-ATP-Allocations.pdf	2012-03-20 16:31	5.2M
	processMetaboliteUsage-ATP-Requirements.pdf	2012-03-20 16:31	3.6M
	processMetaboliteUsage-ATP-Usages.pdf	2012-03-20 16:31	5.1M
	processMetaboliteUsage-Expected-ATP-Usages.pdf	2012-03-20 16:31	12K
	processMetaboliteUsage-Expected-GTP-Usages.pdf	2012-03-20 16:31	12K
	processMetaboliteUsage-GTP-Allocations.pdf	2012-03-20 16:31	2.8M
	processMetaboliteUsage-GTP-Requirements.pdf	2012-03-20 16:31	1.9M
	processMetaboliteUsage-GTP-Usages.pdf	2012-03-20 16:31	3.2M
	singleCell-Growth.mat	2012-03-20 16:31	2.5M
	singleCell-Growth.pdf	2012-03-20 16:31	1.0M
	singleCell-Mass.mat	2012-03-20 16:31	1.0M
	singleCell-Mass.pdf	2012-03-20 16:31	232K
	singleCell-MassNormalized.mat	2012-03-20 16:31	1.0M
	singleCell-MassNormalized.pdf	2012-03-20 16:31	253K
	singleCell-Metabolites.mat	2012-03-20 16:31	7.9M
	singleCell-Metabolites.pdf	2012-03-20 16:31	2.5M
	singleCell-MetabolitesNormalized.mat	2012-03-20 16:31	7.9M
	singleCell-MetabolitesNormalized.pdf	2012-03-20 16:31	1.9M
	singleCell-Ribosomes.mat	2012-03-20 16:31	4.8M
	singleCell-Ribosomes.pdf	2012-03-20 16:31	2.3M
	singleCell-RibosomesGenomicCoordinates.mat	2012-03-20 16:31	4.8M
	singleCell-RibosomesGenomicCoordinates.pdf	2012-03-20 16:31	2.3M
	summary-CellOverview-FinalGrowthRateVsEndTimes.pdf	2012-03-20 16:31	5.7K
	summary-CellOverview-InitialGrowthRateVsEndTimes.pdf	2012-03-20 16:31	5.6K
	summary-CellOverview-Lines1.pdf	2012-03-20 16:31	2.1M
	summary-CellOverview-Lines2.pdf	2012-03-20 16:31	492K
	summary-CellOverview-Lines3.pdf	2012-03-20 16:31	682K
	summary-CellOverview-Lines4.pdf	2012-03-20 16:31	13M
	summary-CellOverview-Lines5.pdf	2012-03-20 16:31	5.8M
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	summary-CellOverview-Lines7.pdf	2012-03-20 16:31	1.0M
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	summary-CellOverview-Lines9.pdf	2012-03-20 16:31	3.1M
	summary.aux	2012-03-20 16:31	10K
	summary.html	2012-03-20 16:31	2.1K
	summary.log	2012-03-20 16:31	70K
	summary.out	2012-03-20 16:31	6.2K
	summary.pdf	2012-03-20 16:31	145M
	summary.tex	2012-03-20 16:31	34K
	summary.toc	2012-03-20 16:31	7.9K